The Graduate School of Natural and Applied Sciences aims to produce graduates with Master's and PhD degrees who will contribute to the industry and academia both in Turkey and around the world. It administers the master's and doctoral programs in the following four colleges:
| College of Arts and Sciences |
College of Engineering |
College of Technology |
College of Architecture and Design |
| Biology |
Computer Engineering |
Biomedical Engineering |
Urban and Regional Planning |
| Physics |
Electrical and Electronics Engineering |
Mechatronics Engineering |
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| Chemistry |
Industrial Engineering |
Automotive Engineering |
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| Mathematics |
Food Engineering |
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Civil Engineering |
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Geological Engineering |
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Chemical Engineering |
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Mechanical Engineering |
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Environmental Engineering |
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Textile Engineering |
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Energy Management and Technologies (Interdisciplinary Program)